Publications

+G.B. Danks, M. Raasholm, and +E.M. Thompson. Trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR. BMC Genomics 20, 908 (2019). https://doi.org/10.1186/s12864-019-6277-x

*+G.B. Danks, *P. Navratilova, B. Lenhard, and +E.M. Thompson. Distinct core promoter codes drive transcription initiation at developmental transitions. BMC Genomics 19, 164 (2018). https://doi.org/10.1186/s12864-018-4504-5

*P. Navratilova, *G.B. Danks, A. Long, S. Butcher, J.R. Manak, and E.M. Thompson. Sex-specific chromatin landscapes in an ultra-compact chordate genome. Epigenetics & Chromatin 10, 3 (2017). https://doi.org/10.1186/s13072-016-0110-4

+G. Danks and +E.M. Thompson. Trans-splicing in metazoans: A link to translational control? Worm, 4(3):e1046030, 2015. https://doi.org/10.1080/21624054.2015.1046030

G.B. Danks, M. Raasholm, C. Campsteijn, A.M. Long, J.R. Manak, B. Lenhard, and E.M. Thompson. Trans-splicing and operons in metazoans: Translational control in maternally regulated development and recovery from growth arrest. Molecular Biology and Evolution, Volume 32, Issue 3, March 2015, Pages 585–599, https://doi.org/10.1093/molbev/msu336

G. Danks, C. Campsteijn, M. Parida, S. Butcher, H. Doddapaneni, B. Fu, R. Petrin, R. Metpally, B. Lenhard, P. Wincker, D. Chourrout, E.M. Thompson, and J.R. Manak. OikoBase: A genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica. Nucleic Acids Research, Volume 41, Issue D1, 1 January 2013, Pages D845–D853, https://doi.org/10.1093/nar/gks1159

J. Hosp, Y. Sagane, G. Danks, and E.M. Thompson. The evolving proteome of a complex extracellular matrix, the Oikopleura house. PLoS ONE, 7(7), 2012. https://doi.org/10.1371/journal.pone.0040172

G.B. Danks, S. Stepney, and L.S.D. Caves. Cotranslational protein folding with L-systems. In: Kampis G., Karsai I., Szathmáry E. (eds) Advances in Artificial Life. Darwin Meets von Neumann. ECAL 2009. Lecture Notes in Computer Science, vol 5777. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-21283-3_36

F. Denoeud, S. Henriet, S. Mungpakdee, J.-M. Aury, C. Da Silva, H. Brinkmann, J. Mikhaleva, L.C. Olsen, C. Jubin, C. Cañestro, J.-M. Bouquet, G. Danks, J. Poulain, C. Campsteijn, M. Adamski, I. Cross, F. Yadetie, M. Muffato, A. Louis, S. Butcher, G. Tsagkogeorga, A. Konrad, S. Singh, M.F. Jensen, E.H. Cong, H. Eikeseth-Otteraa, B. Noel, V. Anthouard, B.M. Porcel, R. Kachouri-Lafond, A. Nishino, M. Ugolini, P. Chourrout, H. Nishida, R. Aasland, S. Huzurbazar, E. Westhof, F. Delsuc, H. Lehrach, R. Reinhardt, J. Weissenbach, S.W. Roy, F. Artiguenave, J.H. Postlethwait, J.R. Manak, E.M. Thompson, O. Jaillon, L. Du Pasquier, P. Boudinot, D.A. Liberles, J.-N. Volff, H. Philippe, B. Lenhard, H.R. Crollius, P. Wincker, and D. Chourrout. Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science, 330(6009), 2010. https://doi.org/10.1126/science.1194167

G. Danks, S. Stepney, and L. Caves. Protein folding with stochastic L-systems. In Artificial Life XI: Proceedings of the 11th International Conference on the Simulation and Synthesis of Living Systems, ALIFE 2008, 2008.