Histone posttranslational modification ChIP-chip from Oikopleura dioica gonads

GEO series: GSE78915 Experiment type: Genome binding/occupancy profiling by genome tiling array Summary: In multicellular organisms, histone posttranslational modifications plays roles in transitions associated with the cell cycle, development, germline specification, gametogenesis and inheritance. Here we defined adaptations of an epigenome in tunicates, sister group to vertebrates, to strong secondary genome compaction in the larvacean, Oikopleura … More Histone posttranslational modification ChIP-chip from Oikopleura dioica gonads

Genome-wide map of spliced-leader-led trans-splice sites in Oikopleura dioica

GEO series: GSE50849 Experiment type: Expression profiling by high throughput sequencing Summary: Polycistronic mRNAs transcribed from operons are resolved via the trans-splicing of a spliced leader (SL) RNA. The SL is also frequently trans-spliced to monocistronic transcripts. Using a modified cap analysis of gene expression (CAGE) protocol we mapped sites of SL trans-splicing genome-wide in the … More Genome-wide map of spliced-leader-led trans-splice sites in Oikopleura dioica

High-resolution genome-wide transcriptomics analysis of O. dioica during recovery from growth arrest

GEO series: GSE50848 Experiment type: Expression profiling by genome tiling array Summary: Polycistronic mRNAs transcribed from operons are resolved via the trans-splicing of a spliced leader (SL) RNA. The SL is also frequently trans-spliced to monocistronic transcripts. Using a modified cap analysis of gene expression (CAGE) protocol we mapped sites of SL trans-splicing genome-wide in the … More High-resolution genome-wide transcriptomics analysis of O. dioica during recovery from growth arrest

High-resolution genome-wide transcriptomics analysis of O. dioica development

GEO Series: GSE39568 Experiment type: Expression profiling by genome tiling array Summary: The developmental transcriptomics of every significant developmental stage of O. dioica at ultra-high resolution. Overall design: 18 samples were included, each in technical triplicate (and one with 4 replicates). These samples included 12 developmental time-point providing high-resolution interrogation of the complete animal life cycle. A … More High-resolution genome-wide transcriptomics analysis of O. dioica development